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Coastal ecosystems rapidly transform as sea levels rise faster than ecosystems can build elevation through biological processes that accrete organic matter and inorganic sediment. Benthic microbial communities (periphyton) are a crucial driver of sediment accretion in coastal wetlands by forming, trapping, and stabilizing sediments. Inorganic sediments can be either generated in situ by mineral-accreting organisms (e.g., calcium carbonates by periphyton), or materials can be transported from a different origin when sediments become resuspended and displaced, such as during high-wind weather events. In situ-generated sedimentary materials may contribute significantly to elevation gains. This study examines the drivers of coastal periphyton mineral production and whether periphytic diatoms may be used to characterize gradients in these drivers. Periphyton mineral production rates and diatom assemblage composition were measured along three coastal gradients of surface water salinity, conductivity, pH, and periphyton nutrient content in the Biscayne Bay Coastal Wetlands of South Florida. Periphyton mineral production rates ranged from 0.20-0.53 g/m2/d and were greatest at sites with the highest periphyton total carbon and mineral content while lowest at sites with the highest periphyton organic content and total nitrogen and soil depth. Diatom assemblages that sorted consistently along the coastal salinity gradient were reliable indicators of periphyton mineral production, with seven taxa indicating high rates and seven indicating low rates. Diatoms can provide a helpful link between biotic and abiotic processes, indicating where periphyton-driven mineral production contributes most to inorganic carbon cycling and mineral-driven elevation recovery and, hence, to resiliency to sea level rise. 

Seagrass ecosystems are recognized for their capacity to sequester and store organic carbon, but there is large variability in soil organic carbon stocks associated with plant traits and environmental conditions, making the quantification and scaling of carbon storage and fluxes needed to contribute to climate change mitigation highly challenging. Here, we provide estimates of carbon stocks associated with seagrass systems (biomass and soil) through analyses of a comprehensive global database including 2700+ seagrass soil cores. The median global soil Corg stock estimate is 24.2 (12.4 – 44.9) Mg Corg ha−1 in the top 30 cm of soil, 27% lower than estimates from previous global syntheses, refining the IPCC Tier 1 soil Corg stock currently used for carbon accounting in places without local data. We estimate that seagrass carbon stocks at risk of degradation could emit 1,154 Tg (665 – 1699) CO2 with a social cost of $213 billion (2020 US dollars), if no action is taken to conserve these habitats. 

Abstract The particulate organic matter buried in carbonate-rich seagrass ecosystems is an important blue carbon reservoir. While carbonate sediments are affected by alkalinity produced or consumed in seagrass-mediated biogeochemical processes, little is known about the corresponding impact on organic matter. A portion of particulate organic matter is carbonate-associated organic matter. Here, we explore its biogeochemistry in a carbonate seagrass meadow in central Florida Bay, USA. We couple inorganic stable isotope analyses (δ³⁴S, δ¹⁸O) with a molecular characterization of dissolved and carbonate associated organic matter (21 tesla Fourier-transform ion cyclotron resonance mass spectrometry). We find that carbonate-associated molecular formulas are highly sulfurized compared to surface water dissolved organic matter, with multiple sulfurization pathways at play. Furthermore, 97% of the formula abundance of surface water dissolved organic matter is shared with carbonate-associated organic matter, indicating connectivity between these two pools. We estimate that 9.2% of the particulate organic matter is carbonate-associated, and readily exchangeable with the broader aquatic system as the sediment dissolves and reprecipitates. 

Water column nutrient concentrations and autotrophy in oligotrophic ecosystems are sensitive to eutrophication and other long-term environmental changes and disturbances. Disturbance can be defined as an event or process that changes the structure and response of an ecosystem to other environmental drivers. The role disturbance plays in regulating ecosystem functions is challenging because the effect of the disturbance can vary in magnitude, duration, and extent spatially and temporally. We measured changes in total nitrogen (TN), dissolved inorganic nutrient (DIN), total phosphorus (TP), soluble reactive phosphorus (SRP), total organic carbon (TOC), and chlorophyll-a (Chl-a) concentrations throughout the Everglades, Florida Bay, and the Florida Keys. This region has been subjected to a variety of natural and anthropogenic disturbances including tropical storms, fires, eutrophication, and rapid increases in water levels from sea-level rise and freshwater restoration. We hypothesized that the rate of change in water quality would be greatest in the coastal ecotone where disturbance frequencies and marine P concentrations are highest, and in freshwater marshes closest to hydrologic changes from restoration. We applied trend analyses on multi-decadal data (1996–2019) collected from 461 locations distributed from inland freshwater Everglades (ridge and slough) to outer marine reefs along the Florida Keys, USA. Total Organic Carbon decreased throughout the study area and was the only parameter with a systematic trend throughout the study area. All other parameters had spatially heterogeneous patterns in long-term trends. Results indicate more variability across a large spatial and temporal extent associated with changes in biogeochemical indicators and water quality conditions. Chemical and biological changes in oligotrophic ecosystems are important indicators of environmental change, and our regional ridge-to-reef assessment revealed ecosystem-specific responses to both long-term environmental changes and disturbance legacies. 

Abstract Seagrasses are increasingly recognized for their ecosystem functions and services. However, both natural and anthropogenic stressors impact seagrass functional traits, for example by altering nutrient regimes. Here, we synthesize 27 yr of data from regional, long‐term seagrass and water quality monitoring programs of south Florida to investigate the impacts of relative nutrient availability on seagrass abundance (as expressed by percent cover) across an oligotrophic seascape. We employ linear mixed‐effect models and generalized additive models to show that seagrass abundance is driven by interannual variations in nutrient concentrations, which are ultimately controlled by climate oscillations (El Niño Southern Oscillation Atlantic Multidecadal Oscillation) via regional rainfall‐runoff relationships. Our study suggests that climate oscillations drive interannual variations in seagrass cover on a regional scale, with high‐rainfall years leading to increased nitrogen availability and higher seagrass abundance in typically nitrogen‐limited backreef meadows. Conversely, these periods are associated with reduced seagrass cover at the more P‐limited inshore sites and in Florida Bay, with yet unknown consequences for the provision of seagrass ecosystem services. We show that nutrient delivery from runoff can have diverging impacts on benthic communities, depending on spatial patterns of relative nutrient limitation, with some N‐limited seagrass meadows showing resilience to periodic nutrient enrichment. 

Although seagrass ecosystems are valued for the services they provide, anthropogenic impacts have led to global declines in seagrass area. South Florida harbors one of the most extensive and iconic seagrass landscapes in the world, but historic seagrass losses appeared to threaten their integrity. The establishment of the Florida Keys National Marine Sanctuary (FKNMS) in 1995 created a benthic community and water quality monitoring network to aid management efforts. With this study, we report on the status and trajectories of benthic communities in South Florida using 25 years of monitoring data. Overall, most of our permanent monitoring sites maintained stable benthic communities over the period of observation. However, for areas that did experience decline, we identified mechanisms for loss of the climax seagrass Thalassia testudinum in the FKNMS with no or only partial recovery over decadal timescales. We observed a shift towards fast-growing Halodule wrightii meadows at anthropogenically nutrient-enriched nearshore sites along the Florida Keys. In addition, we describe almost complete loss of seagrass meadows at some exposed, back-reef sites offshore from the Florida Keys resulting from physical disturbance by major hurricanes. This study demonstrates the utility of long-term monitoring programs for the identification of benthic community trajectories and their putative drivers on the seascape scale, offering valuable lessons for the design of future seagrass monitoring programs. 

Hurricanes are some of the largest environmental drivers of change in coastal systems. We investigated the impacts of Hurricane Irma on benthic macrophyte communities in Florida Bay (FB) and the Florida Keys National Marine Sanctuary (FKNMS), USA. Spatiotemporal analyses were performed at multiple hierarchical levels (site, zone, region) to identify potential changes in the Braun-Blanquet (BB) densities of total seagrass (TSG) and total calcareous green macroalgae (TCAL) post-disturbance and to determine whether changes were attributable to hurricane impacts or normal seasonal and inter-annual variability. There were significant decreases in TSG in one of five zones in FKNMS and in one of six zones in FB, but no change in TCAL was recorded in either system. TSG in the Lower Keys Bayside declined from a mean BB score of 2.6 to 1.2, resulting from storm-induced erosion, whereas TSG in coastal FB declined from 1.05–2.4 to 0.36–2.0, likely due to prolonged hyposalinity and low dissolved oxygen following stormwater drainage. Overall, impacts to South Florida benthic macrophyte communities from Hurricane Irma were not catastrophic and were limited in spatial extent. Our results suggest that coastal areas hit by a storm with heavy winds are more likely to sustain direct physical impacts to the benthos, whereas estuarine areas with longer residence times are more at risk of the indirect effects of stormwater runoff and retention. Our analyses placed putative hurricane impacts within the context of recent variability and historical system baselines through the use of long-term monitoring data coordinated by multiple governmental and academic entities. 

Abstract. The net ecosystem productivity (NEP) of two seagrassmeadows within one of the largest seagrass ecosystems in the world, FloridaBay, was assessed using direct measurements over consecutive diel cyclesduring a short study in the fall of 2018. We report significant differencesbetween NEP determined by dissolved inorganic carbon (NEPDIC) and bydissolved oxygen (NEPDO), likely driven by differences in air–water gasexchange and contrasting responses to variations in light intensity. We alsoacknowledge the impact of advective exchange on metabolic calculations ofNEP and net ecosystem calcification (NEC) using the “open-water” approachand attempt to quantify this effect. In this first direct determination ofNEPDIC in seagrass, we found that both seagrass ecosystems were netheterotrophic, on average, despite large differences in seagrass netabove-ground primary productivity. NEC was also negative, indicating thatboth sites were net dissolving carbonate minerals. We suggest that acombination of carbonate dissolution and respiration in sediments exceededseagrass primary production and calcification, supporting our negative NEPand NEC measurements. However, given the limited spatial (two sites) andtemporal (8 d) extent of this study, our results may not berepresentative of Florida Bay as a whole and may be season-specific. Theresults of this study highlight the need for better temporal resolution,accurate carbonate chemistry accounting, and an improved understanding ofphysical mixing processes in future seagrass metabolism studies.